PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0146100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 175aa    MW: 18162.8 Da    PI: 8.3315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0146100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.9e-063475954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       Er RR+ +   ++eL  llP++     ++ s   i+e+A+ ++ +L
  ORGLA01G0146100.1 34 ERARRQTVSRLYAELGALLPNL----PPRASTTRIVEEAIACVGEL 75
                       9********************6....389**********9887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.342575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-73085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-53384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.8E-4119170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAEEDNLALS VVCERSPGTA VEAASGRPPK AGSERARRQT VSRLYAELGA LLPNLPPRAS  60
TTRIVEEAIA CVGELRAKTA ELEAYSAVAA GRAARDGAAE VVASGKTSCF AVWLRAARAR  120
PGALTRVLEV FQRHGVAVLA ATVARDGEET AVTVTTAAVA PRVLETIKAE IICAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042221e-178AP004222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1003B09.
GenBankAP0149571e-178AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-178CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3EPK41e-117A0A0D3EPK4_9ORYZ; Uncharacterized protein
TrEMBLI1NNM11e-117I1NNM1_ORYGL; Uncharacterized protein
STRINGORGLA01G0146100.11e-117(Oryza glaberrima)
STRINGORGLA11G0204500.11e-117(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931